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Reaction Member List

This is the complete list of members for Reaction, including all inherited members.

accept(SBMLVisitor &v) const Reactionvirtual
addCVTerm(CVTerm *term, bool newBag=false)SBase
addModifier(const ModifierSpeciesReference *msr)Reaction
addProduct(const SpeciesReference *sr)Reaction
addReactant(const SpeciesReference *sr)Reaction
appendAnnotation(const XMLNode *annotation)SBasevirtual
appendAnnotation(const std::string &annotation)SBasevirtual
appendNotes(const XMLNode *notes)SBase
appendNotes(const std::string &notes)SBase
clone() const Reactionvirtual
createKineticLaw()Reaction
createModifier()Reaction
createProduct()Reaction
createReactant()Reaction
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix)SBase
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag)SBase
getAllElements()Reactionvirtual
getAllElementsFromPlugins()SBasevirtual
getAncestorOfType(int type, const std::string pkgName="core")SBase
getAncestorOfType(int type, const std::string pkgName="core") const SBase
getAnnotation()SBase
getAnnotation() const SBase
getAnnotationString()SBase
getAnnotationString() const SBase
getColumn() const SBase
getCompartment() const Reaction
getCVTerm(unsigned int n)SBase
getCVTerms()SBase
getCVTerms() const SBase
getElementByMetaId(std::string metaid)Reactionvirtual
getElementBySId(std::string id)Reactionvirtual
getElementName() const Reactionvirtual
getFast() const Reaction
getId() const Reactionvirtual
getKineticLaw() const Reaction
getKineticLaw()Reaction
getLevel() const SBase
getLine() const SBase
getListOfModifiers() const Reaction
getListOfModifiers()Reaction
getListOfProducts() const Reaction
getListOfProducts()Reaction
getListOfReactants() const Reaction
getListOfReactants()Reaction
getMetaId() const SBase
getMetaId()SBase
getModel() const SBase
getModelHistory() const SBase
getModelHistory()SBase
getModifier(unsigned int n) const Reaction
getModifier(unsigned int n)Reaction
getModifier(const std::string &species) const Reaction
getModifier(const std::string &species)Reaction
getName() const Reactionvirtual
getNamespaces() const SBasevirtual
getNotes()SBase
getNotes() const SBase
getNotesString()SBase
getNotesString() const SBase
getNumCVTerms()SBase
getNumModifiers() const Reaction
getNumPlugins() const SBase
getNumProducts() const Reaction
getNumReactants() const Reaction
getPackageName() const SBase
getPackageVersion() const SBase
getParentSBMLObject()SBase
getParentSBMLObject() const SBase
getPlugin(const std::string &package)SBase
getPlugin(const std::string &package) const SBase
getPlugin(unsigned int n)SBase
getPlugin(unsigned int n) const SBase
getProduct(unsigned int n) const Reaction
getProduct(unsigned int n)Reaction
getProduct(const std::string &species) const Reaction
getProduct(const std::string &species)Reaction
getReactant(unsigned int n) const Reaction
getReactant(unsigned int n)Reaction
getReactant(const std::string &species) const Reaction
getReactant(const std::string &species)Reaction
getResourceBiologicalQualifier(std::string resource)SBase
getResourceModelQualifier(std::string resource)SBase
getReversible() const Reaction
getSBMLDocument() const SBase
getSBMLDocument()SBase
getSBOTerm() const SBase
getSBOTermAsURL() const SBase
getSBOTermID() const SBase
getTypeCode() const Reactionvirtual
getUserData() const SBase
getVersion() const SBase
hasRequiredAttributes() const Reactionvirtual
hasValidLevelVersionNamespaceCombination()SBase
initDefaults()Reaction
isPackageEnabled(const std::string &pkgName) const SBase
isPackageURIEnabled(const std::string &pkgURI) const SBase
isPkgEnabled(const std::string &pkgName) const SBase
isPkgURIEnabled(const std::string &pkgURI) const SBase
isSetAnnotation() const SBase
isSetCompartment() const Reaction
isSetFast() const Reaction
isSetId() const Reactionvirtual
isSetKineticLaw() const Reaction
isSetMetaId() const SBase
isSetModelHistory()SBase
isSetName() const Reactionvirtual
isSetNotes() const SBase
isSetReversible() const Reaction
isSetSBOTerm() const SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb)SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const SBase
matchesSBMLNamespaces(const SBase *sb)SBase
matchesSBMLNamespaces(const SBase *sb) const SBase
operator=(const Reaction &rhs)Reaction
SBase::operator=(const SBase &rhs)SBase
Reaction(unsigned int level, unsigned int version)Reaction
Reaction(SBMLNamespaces *sbmlns)Reaction
Reaction(const Reaction &orig)Reaction
removeFromParentAndDelete()SBasevirtual
removeModifier(unsigned int n)Reaction
removeModifier(const std::string &species)Reaction
removeProduct(unsigned int n)Reaction
removeProduct(const std::string &species)Reaction
removeReactant(unsigned int n)Reaction
removeReactant(const std::string &species)Reaction
removeTopLevelAnnotationElement(const std::string elementName, const std::string elementURI="")SBase
renameMetaIdRefs(std::string oldid, std::string newid)SBasevirtual
renameSIdRefs(std::string oldid, std::string newid)Reactionvirtual
renameUnitSIdRefs(std::string oldid, std::string newid)SBasevirtual
replaceTopLevelAnnotationElement(const XMLNode *annotation)SBase
replaceTopLevelAnnotationElement(const std::string &annotation)SBase
setAnnotation(const XMLNode *annotation)SBasevirtual
setAnnotation(const std::string &annotation)SBasevirtual
setCompartment(const std::string &sid)Reaction
setElementText(const std::string &text)SBaseprotectedvirtual
setFast(bool value)Reaction
setId(const std::string &sid)Reactionvirtual
setKineticLaw(const KineticLaw *kl)Reaction
setMetaId(const std::string &metaid)SBase
setModelHistory(ModelHistory *history)SBase
setName(const std::string &name)Reactionvirtual
setNamespaces(XMLNamespaces *xmlns)SBase
setNotes(const XMLNode *notes)SBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)SBase
setReversible(bool value)Reaction
setSBOTerm(int value)SBasevirtual
setSBOTerm(const std::string &sboid)SBasevirtual
setUserData(void *userData)SBase
toSBML()SBase
unsetAnnotation()SBase
unsetCompartment()Reaction
unsetCVTerms()SBase
unsetFast()Reaction
unsetId()SBasevirtual
unsetKineticLaw()Reaction
unsetMetaId()SBase
unsetModelHistory()SBase
unsetName()Reactionvirtual
unsetNotes()SBase
unsetSBOTerm()SBase
~Reaction()Reactionvirtual
~SBase()SBasevirtual