Implementation of SBML's ListOfInitialAssignments construct.
The various ListOf___ classes in SBML are merely containers used for organizing the main components of an SBML model. All are derived from the abstract class SBase, and inherit the various attributes and subelements of SBase, such as "metaid" as and "annotation". The ListOf___ classes do not add any attributes of their own.
The relationship between the lists and the rest of an SBML model is illustrated by the following (for SBML Level 2 Version 4):
ListOf___ elements in an SBML Model
Readers may wonder about the motivations for using the ListOf___ containers. A simpler approach in XML might be to place the components all directly at the top level of the model definition. The choice made in SBML is to group them within XML elements named after
ListOfClassname, in part because it helps organize the components. More importantly, the fact that the container classes are derived from
SBase means that software tools can add information
about the lists themselves into each list container's "annotation".
- See Also
- ListOfFunctionDefinitions
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ListOfUnitDefinitions
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ListOfCompartmentTypes
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ListOfSpeciesTypes
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ListOfCompartments
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ListOfSpecies
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ListOfParameters
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ListOfInitialAssignments
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ListOfRules
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ListOfConstraints
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ListOfReactions
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ListOfEvents