Here is a list of all class members with links to the classes they belong to:
- g -
- get()
: List
, ListOf
, ListOfCompartments
, ListOfCompartmentTypes
, ListOfConstraints
, ListOfDeletions
, ListOfEventAssignments
, ListOfEvents
, ListOfExternalModelDefinitions
, ListOfFunctionDefinitions
, ListOfInitialAssignments
, ListOfLocalParameters
, ListOfModelDefinitions
, ListOfParameters
, ListOfPorts
, ListOfReactions
, ListOfReplacedElements
, ListOfRules
, ListOfSpecies
, ListOfSpeciesReferences
, ListOfSpeciesTypes
, ListOfSubmodels
, ListOfUnitDefinitions
, ListOfUnits
- getAllElements()
: CompModelPlugin
, CompSBasePlugin
, CompSBMLDocumentPlugin
, Event
, KineticLaw
, ListOf
, Model
, Reaction
, SBase
, SBasePlugin
, SBaseRef
, SBMLDocument
, Submodel
, UnitDefinition
- getAllElementsFromPlugins()
: SBase
- getAllInstantiatedElements()
: Submodel
- getAncestorOfType()
: SBase
- getAnnotation()
: SBase
- getAnnotationString()
: SBase
- getApplicableValidators()
: SBMLInternalValidator
- getAreaUnits()
: Model
- getArgument()
: FunctionDefinition
- getAttributes()
: XMLToken
- getAttributesLength()
: XMLToken
- getAttrIndex()
: XMLToken
- getAttrName()
: XMLToken
- getAttrPrefix()
: XMLToken
- getAttrPrefixedName()
: XMLToken
- getAttrURI()
: XMLToken
- getAttrValue()
: XMLToken
- getBiologicalQualifierType()
: CVTerm
- getBody()
: FunctionDefinition
- getBoolValue()
: ConversionOption
, ConversionProperties
- getBoundaryCondition()
: Species
- getCategory()
: Validator
, XMLError
- getCategoryAsString()
: XMLError
- getCharacter()
: ASTNode
- getCharacters()
: XMLToken
- getCharge()
: Species
- getChild()
: ASTNode
, XMLNode
- getClass()
: ASTNode
- getColumn()
: SBase
, XMLError
, XMLToken
- getCompartment()
: Model
, Reaction
, Species
- getCompartmentType()
: Compartment
, Model
- getConstant()
: Compartment
, Parameter
, Species
, SpeciesReference
- getConstraint()
: Model
- getConversionFactor()
: Model
, ReplacedElement
, Species
- getConversionValidators()
: SBMLInternalValidator
- getConverterByIndex()
: SBMLConverterRegistry
- getConverterFor()
: SBMLConverterRegistry
- getCreatedDate()
: ModelHistory
- getCreator()
: ModelHistory
- getCVTerm()
: SBase
- getCVTerms()
: SBase
- getDateAsString()
: Date
- getDay()
: Date
- getDefaultLevel()
: CompExtension
, SBMLDocument
- getDefaultPackageVersion()
: CompExtension
- getDefaultProperties()
: CompFlatteningConverter
, SBMLConverter
, SBMLFunctionDefinitionConverter
, SBMLInitialAssignmentConverter
, SBMLLevelVersionConverter
, SBMLRuleConverter
, SBMLStripPackageConverter
, SBMLUnitsConverter
- getDefaultVersion()
: CompExtension
, SBMLDocument
- getDefinitionURL()
: ASTNode
- getDelay()
: Event
- getDeletion()
: ReplacedElement
, Submodel
- getDenominator()
: ASTNode
, SpeciesReference
- getDerivedUnitDefinition()
: Compartment
, Delay
, EventAssignment
, InitialAssignment
, KineticLaw
, LocalParameter
, Parameter
, Rule
, Species
, StoichiometryMath
- getDescription()
: ConversionOption
, ConversionProperties
- getDivider()
: CompModelPlugin
- getDocument()
: SBMLConverter
, SBMLValidator
- getDoubleValue()
: ConversionOption
, ConversionProperties
- getElementByMetaId()
: CompModelPlugin
, CompSBasePlugin
, CompSBMLDocumentPlugin
, Event
, KineticLaw
, ListOf
, Model
, Reaction
, SBase
, SBasePlugin
, SBaseRef
, SBMLDocument
, Submodel
, UnitDefinition
- getElementBySId()
: CompModelPlugin
, CompSBasePlugin
, CompSBMLDocumentPlugin
, Event
, KineticLaw
, ListOf
, ListOfEventAssignments
, ListOfInitialAssignments
, ListOfLocalParameters
, ListOfPorts
, ListOfRules
, ListOfUnitDefinitions
, Model
, Reaction
, SBase
, SBasePlugin
, SBaseRef
, SBMLDocument
, Submodel
, UnitDefinition
- getElementName()
: Compartment
, CompartmentType
, Constraint
, Delay
, Deletion
, Event
, EventAssignment
, ExternalModelDefinition
, FunctionDefinition
, InitialAssignment
, KineticLaw
, ListOf
, ListOfCompartments
, ListOfCompartmentTypes
, ListOfConstraints
, ListOfDeletions
, ListOfEventAssignments
, ListOfEvents
, ListOfExternalModelDefinitions
, ListOfFunctionDefinitions
, ListOfInitialAssignments
, ListOfLocalParameters
, ListOfModelDefinitions
, ListOfParameters
, ListOfPorts
, ListOfReactions
, ListOfReplacedElements
, ListOfRules
, ListOfSpecies
, ListOfSpeciesReferences
, ListOfSpeciesTypes
, ListOfSubmodels
, ListOfUnitDefinitions
, ListOfUnits
, LocalParameter
, Model
, ModelDefinition
, ModifierSpeciesReference
, Parameter
, Port
, Priority
, Reaction
, ReplacedBy
, ReplacedElement
, Rule
, SBase
, SBaseRef
, SBMLDocument
, Species
, SpeciesReference
, SpeciesType
, StoichiometryMath
, Submodel
, Trigger
, Unit
, UnitDefinition
- getElementNamespace()
: SBasePlugin
- getEmail()
: ModelCreator
- getError()
: SBMLDocument
, SBMLErrorLog
, XMLErrorLog
- getErrorId()
: XMLError
- getErrorIdOffset()
: XMLError
- getErrorLog()
: SBMLDocument
, SBMLValidator
- getEvent()
: Model
- getEventAssignment()
: Event
- getExponent()
: ASTNode
, Unit
- getExponentAsDouble()
: Unit
- getExtension()
: SBMLExtensionRegistry
- getExtentConversionFactor()
: Submodel
- getExtentUnits()
: Model
- getExternalModelDefinition()
: CompSBMLDocumentPlugin
- getFailure()
: SBMLValidator
- getFailures()
: SBMLValidator
, Validator
- getFamilyName()
: ModelCreator
- getFast()
: Reaction
- getFloatValue()
: ConversionOption
, ConversionProperties
- getFormula()
: KineticLaw
, Rule
- getFunctionDefinition()
: Model
- getGivenName()
: ModelCreator
- getHasOnlySubstanceUnits()
: Species
- getHost()
: SBMLUri
- getHour()
: Date
- getHoursOffset()
: Date
- getId()
: ASTNode
, Compartment
, CompartmentType
, Deletion
, Event
, ExternalModelDefinition
, FunctionDefinition
, InitialAssignment
, Model
, Parameter
, Port
, Reaction
, Rule
, SimpleSpeciesReference
, Species
, SpeciesType
, Submodel
, UnitDefinition
, VConstraint
- getIdRef()
: SBaseRef
- getIndex()
: XMLAttributes
, XMLNamespaces
, XMLNode
- getIndexByPrefix()
: XMLNamespaces
- getInitialAmount()
: Species
- getInitialAssignment()
: Model
- getInitialConcentration()
: Species
- getInitialValue()
: Trigger
- getInstance()
: SBMLConverterRegistry
, SBMLExtensionRegistry
, SBMLResolverRegistry
- getInstantiation()
: Submodel
- getInteger()
: ASTNode
- getIntValue()
: ConversionOption
, ConversionProperties
- getItemTypeCode()
: ListOf
, ListOfCompartments
, ListOfCompartmentTypes
, ListOfConstraints
, ListOfDeletions
, ListOfEventAssignments
, ListOfEvents
, ListOfExternalModelDefinitions
, ListOfFunctionDefinitions
, ListOfInitialAssignments
, ListOfLocalParameters
, ListOfModelDefinitions
, ListOfParameters
, ListOfPorts
, ListOfReactions
, ListOfReplacedElements
, ListOfRules
, ListOfSpecies
, ListOfSpeciesReferences
, ListOfSpeciesTypes
, ListOfSubmodels
, ListOfUnitDefinitions
, ListOfUnits
- getKey()
: ConversionOption
- getKind()
: Unit
- getKineticLaw()
: Reaction
- getL1TypeCode()
: Rule
- getLeftChild()
: ASTNode
- getLength()
: XMLAttributes
, XMLNamespaces
- getLengthUnits()
: Model
- getLevel()
: CompExtension
, SBase
, SBasePlugin
, SBMLExtension
, SBMLNamespaces
- getLine()
: SBase
, XMLError
, XMLToken
- getListCreators()
: ModelHistory
- getListModifiedDates()
: ModelHistory
- getListOfCompartments()
: Model
- getListOfCompartmentTypes()
: Model
- getListOfConstraints()
: Model
- getListOfDeletions()
: Submodel
- getListOfEventAssignments()
: Event
- getListOfEvents()
: Model
- getListOfExternalModelDefinitions()
: CompSBMLDocumentPlugin
- getListOfFunctionDefinitions()
: Model
- getListOfInitialAssignments()
: Model
- getListOfLocalParameters()
: KineticLaw
- getListOfModelDefinitions()
: CompSBMLDocumentPlugin
- getListOfModifiers()
: Reaction
- getListOfNodes()
: ASTNode
- getListOfParameters()
: KineticLaw
, Model
- getListOfPorts()
: CompModelPlugin
- getListOfProducts()
: Reaction
- getListOfReactants()
: Reaction
- getListOfReactions()
: Model
- getListOfReplacedElements()
: CompSBasePlugin
- getListOfRules()
: Model
- getListOfSpecies()
: Model
- getListOfSpeciesTypes()
: Model
- getListOfSubmodels()
: CompModelPlugin
- getListOfUnitDefinitions()
: Model
- getListOfUnits()
: UnitDefinition
- getLocalParameter()
: KineticLaw
- getLocationURI()
: SBMLDocument
- getMantissa()
: ASTNode
- getMath()
: Constraint
, Delay
, EventAssignment
, FunctionDefinition
, InitialAssignment
, KineticLaw
, Priority
, Rule
, StoichiometryMath
, Trigger
- getMd5()
: ExternalModelDefinition
- getMessage()
: Constraint
, XMLError
- getMessageString()
: Constraint
- getMetaId()
: SBase
- getMetaIdRef()
: SBaseRef
- getMinute()
: Date
- getMinutesOffset()
: Date
- getModel()
: CompSBMLDocumentPlugin
, L3ParserSettings
, SBase
, SBMLDocument
, SBMLValidator
- getModelDefinition()
: CompSBMLDocumentPlugin
- getModelHistory()
: SBase
- getModelQualifierType()
: CVTerm
- getModelRef()
: ExternalModelDefinition
, Submodel
- getModifiedDate()
: ModelHistory
- getModifier()
: Reaction
- getMonth()
: Date
- getMultiplier()
: Unit
- getName()
: ASTNode
, Compartment
, CompartmentType
, CompExtension
, Deletion
, Event
, ExternalModelDefinition
, FunctionDefinition
, Model
, Parameter
, Port
, Reaction
, SBMLExtension
, SimpleSpeciesReference
, Species
, SpeciesType
, Submodel
, UnitDefinition
, XMLAttributes
, XMLToken
, XMLTriple
- getNamespaceIndex()
: XMLToken
- getNamespaceIndexByPrefix()
: XMLToken
- getNamespacePrefix()
: XMLToken
- getNamespaces()
: SBase
, SBMLDocument
, SBMLNamespaces
, XMLToken
- getNamespacesLength()
: XMLToken
- getNamespaceURI()
: XMLToken
- getNotes()
: SBase
- getNotesString()
: SBase
- getNumArguments()
: FunctionDefinition
- getNumAttributes()
: XMLAttributes
- getNumChildren()
: ASTNode
, XMLNode
- getNumCompartments()
: Model
- getNumCompartmentTypes()
: Model
- getNumConstraints()
: Model
- getNumConverters()
: SBMLConverterRegistry
- getNumCreators()
: ModelHistory
- getNumCVTerms()
: SBase
- getNumDeletions()
: Submodel
- getNumerator()
: ASTNode
- getNumErrors()
: SBMLDocument
, XMLErrorLog
- getNumEventAssignments()
: Event
- getNumEvents()
: Model
- getNumExtension()
: SBMLExtensionRegistry
- getNumExternalModelDefinitions()
: CompSBMLDocumentPlugin
- getNumFailsWithSeverity()
: SBMLErrorLog
- getNumFailures()
: SBMLValidator
- getNumFunctionDefinitions()
: Model
- getNumInitialAssignments()
: Model
- getNumLocalParameters()
: KineticLaw
- getNumModelDefinitions()
: CompSBMLDocumentPlugin
- getNumModifiedDates()
: ModelHistory
- getNumModifiers()
: Reaction
- getNumNamespaces()
: XMLNamespaces
- getNumOfSBasePlugins()
: SBMLExtension
- getNumOfSupportedPackageURI()
: SBasePluginCreatorBase
, SBMLExtension
- getNumParameters()
: KineticLaw
, Model
- getNumPlugins()
: SBase
- getNumPorts()
: CompModelPlugin
- getNumProducts()
: Reaction
- getNumReactants()
: Reaction
- getNumReactions()
: Model
- getNumReferents()
: ReplacedElement
, SBaseRef
- getNumRegisteredPackages()
: SBMLExtensionRegistry
- getNumReplacedElements()
: CompSBasePlugin
- getNumResolvers()
: SBMLResolverRegistry
- getNumResources()
: CVTerm
- getNumRules()
: Model
- getNumSemanticsAnnotations()
: ASTNode
- getNumSpecies()
: Model
- getNumSpeciesTypes()
: Model
- getNumSpeciesWithBoundaryCondition()
: Model
- getNumSubmodels()
: CompModelPlugin
- getNumUnitDefinitions()
: Model
- getNumUnits()
: UnitDefinition
- getOffset()
: Unit
- getOperatorName()
: ASTNode
- getOption()
: ConversionProperties
- getOrganisation()
: ModelCreator
- getOrganization()
: ModelCreator
- getOutside()
: Compartment
- getPackage()
: XMLError
- getPackageName()
: CompBase
, CompExtension
, SBase
, SBaseExtensionPoint
, SBasePlugin
, SBMLExtensionNamespaces< SBMLExtensionType >
, SBMLNamespaces
- getPackageRequired()
: SBMLDocument
- getPackageURI()
: CompBase
- getPackageVersion()
: CompBase
, CompExtension
, SBase
, SBasePlugin
, SBMLExtension
, SBMLExtensionNamespaces< SBMLExtensionType >
- getParameter()
: KineticLaw
, Model
- getParentModel()
: CompBase
- getParentSBMLObject()
: ASTNode
, SBase
, SBasePlugin
- getParseAvogadroCsymbol()
: L3ParserSettings
- getParseCollapseMinus()
: L3ParserSettings
- getParseLog()
: L3ParserSettings
- getParseUnits()
: L3ParserSettings
- getPath()
: SBMLUri
- getPersistent()
: Trigger
- getPkgRequired()
: SBMLDocument
- getPlugin()
: SBase
- getPort()
: CompModelPlugin
- getPortRef()
: SBaseRef
- getPrecedence()
: ASTNode
- getPrefix()
: CompBase
, SBasePlugin
, XMLAttributes
, XMLNamespaces
, XMLToken
, XMLTriple
- getPrefixedName()
: XMLAttributes
, XMLTriple
- getPriority()
: Event
- getProduct()
: Reaction
- getProperties()
: SBMLConverter
- getQualifierType()
: CVTerm
- getQuery()
: SBMLUri
- getReactant()
: Reaction
- getReaction()
: Model
- getReal()
: ASTNode
- getReferencedElement()
: SBaseRef
- getReferencedElementFrom()
: ReplacedElement
, SBaseRef
- getReferencedModel()
: ExternalModelDefinition
- getRegisteredPackageName()
: SBMLExtensionRegistry
- getRegisteredPackageNames()
: SBMLExtensionRegistry
- getReplacedBy()
: CompSBasePlugin
- getReplacedElement()
: CompSBasePlugin
- getRequired()
: SBMLDocumentPlugin
- getResolverByIndex()
: SBMLResolverRegistry
- getResourceBiologicalQualifier()
: SBase
- getResourceModelQualifier()
: SBase
- getResources()
: CVTerm
- getResourceURI()
: CVTerm
- getReversible()
: Reaction
- getRightChild()
: ASTNode
- getRule()
: Model
- getSBaseRef()
: SBaseRef
- getSBMLDocument()
: SBase
, SBasePlugin
- getSBMLErrMsg()
: SBMLConstructorException
- getSBMLExtensionNamespaces()
: CompExtension
, SBMLExtension
- getSBMLNamespaceURI()
: SBMLNamespaces
- getSBOTerm()
: SBase
- getSBOTermAsURL()
: SBase
- getSBOTermID()
: SBase
- getScale()
: Unit
- getScheme()
: SBMLUri
- getSecond()
: Date
- getSemanticsAnnotation()
: ASTNode
- getSeverity()
: VConstraint
, XMLError
- getSeverityAsString()
: XMLError
- getShortMessage()
: XMLError
- getSignOffset()
: Date
- getSize()
: Compartment
, List
- getSource()
: ExternalModelDefinition
- getSpatialDimensions()
: Compartment
- getSpatialDimensionsAsDouble()
: Compartment
- getSpatialSizeUnits()
: Species
- getSpecies()
: Model
, SimpleSpeciesReference
- getSpeciesReference()
: Model
- getSpeciesType()
: Model
, Species
- getStandardMessage()
: XMLError
- getStoichiometry()
: SpeciesReference
- getStoichiometryMath()
: SpeciesReference
- getStringFromTypeCode()
: CompExtension
, SBMLExtension
- getStyle()
: ASTNode
- getSubmodel()
: CompModelPlugin
- getSubmodelRef()
: Replacing
- getSubstanceConversionFactor()
: Submodel
- getSubstanceUnits()
: KineticLaw
, Model
, Species
- getSupportedNamespaces()
: SBMLNamespaces
- getSupportedPackageURI()
: SBasePluginCreatorBase
, SBMLExtension
- getSymbol()
: InitialAssignment
- getTargetExtensionPoint()
: SBasePluginCreatorBase
- getTargetLevel()
: SBMLLevelVersionConverter
- getTargetNamespaces()
: ConversionProperties
, SBMLConverter
- getTargetPackageName()
: SBasePluginCreatorBase
- getTargetSBMLTypeCode()
: SBasePluginCreatorBase
- getTargetVersion()
: SBMLLevelVersionConverter
- getTimeConversionFactor()
: Submodel
- getTimeUnits()
: Event
, KineticLaw
, Model
- getTrigger()
: Event
- getType()
: ASTNode
, ConversionOption
, ConversionProperties
, Rule
- getTypeCode()
: Compartment
, CompartmentType
, Constraint
, Delay
, Deletion
, Event
, EventAssignment
, ExternalModelDefinition
, FunctionDefinition
, InitialAssignment
, KineticLaw
, ListOf
, ListOfCompartments
, ListOfCompartmentTypes
, ListOfConstraints
, ListOfEventAssignments
, ListOfEvents
, ListOfFunctionDefinitions
, ListOfInitialAssignments
, ListOfLocalParameters
, ListOfParameters
, ListOfReactions
, ListOfRules
, ListOfSpecies
, ListOfSpeciesReferences
, ListOfSpeciesTypes
, ListOfUnitDefinitions
, ListOfUnits
, LocalParameter
, Model
, ModelDefinition
, ModifierSpeciesReference
, Parameter
, Port
, Priority
, Reaction
, ReplacedBy
, ReplacedElement
, Rule
, SBase
, SBaseExtensionPoint
, SBaseRef
, SBMLDocument
, Species
, SpeciesReference
, SpeciesType
, StoichiometryMath
, Submodel
, Trigger
, Unit
, UnitDefinition
- getUnit()
: UnitDefinition
- getUnitDefinition()
: Model
- getUnitRef()
: SBaseRef
- getUnits()
: ASTNode
, Compartment
, Parameter
, Rule
, Species
- getURI()
: CompExtension
, SBasePlugin
, SBMLExtension
, SBMLExtensionNamespaces< SBMLExtensionType >
, SBMLNamespaces
- getUri()
: SBMLUri
- getURI()
: XMLAttributes
, XMLNamespaces
, XMLToken
, XMLTriple
- getUserData()
: ASTNode
, SBase
- getUseValuesFromTriggerTime()
: Event
- getValidityFlag()
: SBMLLevelVersionConverter
- getValue()
: ConversionOption
, ConversionProperties
, Parameter
, XMLAttributes
- getVariable()
: EventAssignment
, Rule
- getVersion()
: CompExtension
, SBase
, SBasePlugin
, SBMLExtension
, SBMLNamespaces
- getVolume()
: Compartment
- getVolumeUnits()
: Model
- getXmlnsL3V1V1()
: CompExtension
- getYear()
: Date