libSBML Perl API  libSBML 5.8.0 Perl API
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File List
Here is a list of all files with brief descriptions:
o*AlgebraicRule.cppImplementations of AlgebraicRule
o*AlgebraicRule.hDefinitions of AlgebraicRule
o*AssignmentRule.cppImplementations of AssignmentRule
o*AssignmentRule.hDefinitions of AssignmentRule
o*ASTNode.cppAbstract Syntax Tree (AST) for representing formula trees
o*ASTNode.hAbstract Syntax Tree (AST) for representing formula trees
o*common.hCommon functions and macros for C and C++
o*Compartment.cppImplementations of Compartment and ListOfCompartments
o*Compartment.hDefinitions of Compartment and ListOfCompartments
o*CompartmentType.cppImplementation of CompartmentType and ListOfCompartmentTypes
o*CompartmentType.hDefinitions of CompartmentType and ListOfCompartmentTypes
o*CompBase.cppImplementation of CompBase, the base class of extension entities plugged in SBase derived classes in the SBML Core package
o*CompBase.hDefinition of CompBase, the base class of extension entities plugged in SBase derived classes in the SBML Core package
o*CompConsistencyValidator.cpp
o*CompConsistencyValidator.h
o*CompExtension.cppImplementation of CompExtension, the core module of comp package
o*CompExtension.hDefinition of CompExtension, the core module of comp package
o*CompExtensionTypes.hInclude all SBML types of Comp extension in a single header file
o*CompFlatteningConverter.cppImplementation of a first flattening converter
o*CompFlatteningConverter.hDefinition of a first flattening converter
o*compfwd.hSBML Comp C structure declarations
o*CompIdentifierConsistencyValidator.cpp
o*CompIdentifierConsistencyValidator.h
o*CompModelPlugin.cppImplementation of CompModelPlugin, the plugin class of comp package for the SBase element
o*CompModelPlugin.hDefinition of CompModelPlugin, the plugin class of comp package for the Model element
o*CompSBasePlugin.cppImplementation of CompSBasePlugin, the plugin class of comp package for the SBase element
o*CompSBasePlugin.hDefinition of CompSBasePlugin, the plugin class of comp package for the Model element
o*CompSBMLDocumentPlugin.cppImplementation of CompSBMLDocumentPlugin, the plugin class of comp package for the SBase element
o*CompSBMLDocumentPlugin.hDefinition of CompSBMLDocumentPlugin, the plugin class of comp package for the Model element
o*CompSBMLError.hRepresents SBML errors and other diagnostics
o*CompSBMLErrorTable.hRepresents SBML errors and other diagnostics
o*CompValidator.cpp
o*CompValidator.hBase class for SBML CompValidators
o*CompVisitor.cppVisitor Design Pattern for the SBML object tree
o*CompVisitor.hVisitor Design Pattern for the SBML object tree
o*ConsistencyValidator.cpp
o*ConsistencyValidator.h
o*Constraint.cppImplementations of Constraint and ListOfConstraints
o*Constraint.hDefinitions of Constraint and ListOfConstraints
o*ConstraintMacros.hDefines the validator constraint "language"
o*ConversionOption.cppImplementation of ConversionOption, the class encapsulating conversion options
o*ConversionOption.hDefinition of ConversionOption, the class encapsulating conversion options
o*ConversionProperties.cppImplemenentation of ConversionProperties, the class encapsulating conversion configuration
o*ConversionProperties.hDefinition of ConversionProperties, the class encapsulating conversion configuration
o*CVTerm.cppCVTerm I/O
o*CVTerm.hDefinition of a CVTerm class for adding annotations to a Model
o*Date.cppDate I/O
o*Date.hDate I/O
o*Delay.cppImplementation of Delay
o*Delay.hDefinition of Delay
o*Deletion.cppImplementation of Deletion, the SBaseRef derived class of deletions package
o*Deletion.hDefinition of Deletion, the SBase derived class of deletions package
o*Event.cppImplementations of Event and ListOfEvents
o*Event.hDefinitions of Event and ListOfEvents
o*EventAssignment.cppImplementation of EventAssignment
o*EventAssignment.hDefinition of EventAssignment and ListOfEventAssignments
o*ExpectedAttributes.cppImplementation of ExpectedAttributes, the class allowing the specification of attributes to expect
o*ExpectedAttributes.hDefinition of ExpectedAttributes, the class allowing the specification of attributes to expect
o*extern.hDefinitions of LIBSBML_EXTERN and related things
o*ExternalModelDefinition.cppImplementation of ExternalModelDefinition, the SBase-derived class of the comp package
o*ExternalModelDefinition.hDefinition of ExternalModelDefinition, the SBase derived class of the comp package
o*FormulaFormatter.cFormats an AST formula tree as an SBML formula string
o*FormulaFormatter.hFormats an AST formula tree as an SBML formula string
o*FormulaParser.cParses an SBML formula string into an AST
o*FormulaParser.hParses an SBML formula string into an AST
o*FormulaTokenizer.cTokenizes an SBML formula string
o*FormulaTokenizer.hTokenizes an SBML formula string
o*FunctionDefinition.cppImplementation of FunctionDefinition and ListOfFunctionDefinitions
o*FunctionDefinition.hDefinitions of FunctionDefinition and ListOfFunctionDefinitions
o*IdentifierConsistencyValidator.cpp
o*IdentifierConsistencyValidator.h
o*InitialAssignment.cppImplementation of InitialAssignment and ListOfInitialAssignments
o*InitialAssignment.hDefinitions of InitialAssignment and ListOfInitialAssignments
o*InternalConsistencyValidator.cpp
o*InternalConsistencyValidator.h
o*KineticLaw.cppImplementation of KineticLaw
o*KineticLaw.hDefinition of KineticLaw
o*L1CompatibilityValidator.cpp
o*L1CompatibilityValidator.h
o*L2v1CompatibilityValidator.cpp
o*L2v1CompatibilityValidator.h
o*L2v2CompatibilityValidator.cpp
o*L2v2CompatibilityValidator.h
o*L2v3CompatibilityValidator.cpp
o*L2v3CompatibilityValidator.h
o*L2v4CompatibilityValidator.cpp
o*L2v4CompatibilityValidator.h
o*L3Parser.cpp
o*L3Parser.hDefinition of the level 3 infix-to-mathml parser C functions
o*L3ParserSettings.cppDefinition of the level 3 infix-to-mathml parser settings
o*L3ParserSettings.hDefinition of the level 3 infix-to-mathml parser settings
o*L3v1CompatibilityValidator.cpp
o*L3v1CompatibilityValidator.h
o*libsbml-config-common.h
o*libsbml-config-packages.h
o*libsbml-config.hDecides whether to #include Unix or Windows configuration variables
o*libsbml-namespace.hDefines C++ namespace of libSBML
o*libsbml-package.hDefinitions of the PACKAGE_ variables
o*libsbml-version.cppDefine libSBML version numbers for access from client software
o*libsbml-version.hDefine libSBML version numbers for access from client software
o*List.cppSimple, generic list class
o*List.hSimple, generic list utility class
o*ListOf.cppWraps List and inherits from SBase
o*ListOf.h
o*ListOfDeletions.cppImplementation of ListOfDeletions
o*ListOfDeletions.hDefinition of ListOfDeletions, the SBase derived class of deletions package
o*ListOfExternalModelDefinitions.cppImplementation of ListOfExternalModelDefinitions
o*ListOfExternalModelDefinitions.hDefinition of ListOfExternalModelDefinitions, the SBase derived class of externalModelDefinitions package
o*ListOfModelDefinitions.cpp
o*ListOfModelDefinitions.hDefinition of ListOfModelDefinitions, the SBase derived class of modelDefinitions package
o*ListOfPorts.cppImplementation of ListOfPorts
o*ListOfPorts.hDefinition of ListOfPorts, the SBase derived class of ports package
o*ListOfReplacedElements.cpp
o*ListOfReplacedElements.hDefinition of ListOfReplacedElements, the SBase derived class of replacedElements package
o*ListOfSubmodels.cppImplementation of ListOfSubmodels
o*ListOfSubmodels.hDefinition of ListOfSubmodels, the SBase derived class of submodels package
o*LocalParameter.cppImplementations of LocalLocalParameter and ListOfLocalLocalParameters
o*LocalParameter.hDefinitions of LocalParameter and ListOfLocalParameters
o*MathML.cppUtilities for reading and writing MathML to/from text strings
o*MathML.hUtilities for reading and writing MathML to/from text strings
o*MathMLConsistencyValidator.cpp
o*MathMLConsistencyValidator.h
o*Model.cppImplementation of Model
o*Model.hDefinition of Model
o*ModelCreator.cppModelCreator I/O
o*ModelCreator.hModelCreator I/O
o*ModelDefinition.cppImplementation of ModelDefinition, the Subelement derived class of modelDefinitions package
o*ModelDefinition.hDefinition of ModelDefinition, the SBase derived class of the comp package
o*ModelHistory.cppModelHistory I/O
o*ModelHistory.hModelHistory I/O
o*ModelingPracticeValidator.cpp
o*ModelingPracticeValidator.h
o*ModifierSpeciesReference.cppImplementation of ModifierSpeciesReference
o*ModifierSpeciesReference.hDefinitions of ModifierSpeciesReference
o*operationReturnValues.hEnumeration of values returned by operations within libSBML
o*OverdeterminedValidator.cpp
o*OverdeterminedValidator.h
o*Parameter.cppImplementations of Parameter and ListOfParameters
o*Parameter.hDefinitions of Parameter and ListOfParameters
o*Port.cppImplementation of Port, the SBase-derived class of the comp package
o*Port.hDefinition of Port, the SBase derived class of the comp package
o*Priority.cppImplementation of Priority
o*Priority.hDefinition of Priority
o*RateRule.cppImplementations of RateRule
o*RateRule.hDefinitions of RateRule
o*RDFAnnotation.hRDFAnnotation I/O
o*RDFAnnotationParser.cppRDFAnnotation I/O
o*RDFAnnotationParser.h
o*Reaction.cppImplementations of Reaction and ListOfReactions
o*Reaction.hDefinitions of Reaction and ListOfReactions
o*RegisterConverters.cppRegisters all available converters
o*RegisterExtensions.h
o*ReplacedBy.cppImplementation of ReplacedBy, the SBaseRef derived class of the comp package
o*ReplacedBy.hDefinition of ReplacedBy, the Replacing-derived class of the comp package
o*ReplacedElement.cppImplementation of ReplacedElement, the Subelement derived class of replacedElements package
o*ReplacedElement.hDefinition of ReplacedElement, the SBase derived class of replacedElements package
o*Replacing.cppImplementation of Replacing, the SBaseRef derived class of Replacings package
o*Replacing.hDefinition of Replacing, the SBaseRef-derived class of the comp package
o*Rule.cppImplementations of Rule and ListOfRules
o*Rule.hDefinitions of Rule and ListOfRules
o*SBase.cppImplementation of SBase, the base object of all SBML objects
o*SBase.hDefinition of SBase, the base object of all SBML objects
o*SBaseExtensionPoint.cpp
o*SBaseExtensionPoint.hImplementation of SBaseExtensionPoint
o*SBasePlugin.cppImplementation of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package
o*SBasePlugin.hDefinition of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package
o*SBasePluginCreator.hDefinition of SBasePluginCreator, the template class of SBasePlugin creator classes
o*SBasePluginCreatorBase.cppImplementation of SBasePluginCreatorBase, the base class of SBasePlugin creator classes
o*SBasePluginCreatorBase.hDefinition of SBasePluginCreatorBase, the base class of SBasePlugin creator classes
o*SBaseRef.cppImplementation of SBaseRef, the SBase-derived class of the comp package
o*SBaseRef.hDefinition of SBaseRef, the SBase derived class of the comp package
o*SBMLConstructorException.cppImplementation of SBMLConstructorException, the exception class for constructor exceptions
o*SBMLConstructorException.hDefinition of SBMLConstructorException, the exception class for constructor exceptions
o*SBMLConvert.cppPerforms conversion between SBML levels
o*SBMLConverter.cppImplementation of SBMLConverter, the base class of package extensions
o*SBMLConverter.hDefinition of SBMLConverter, the base class for SBML conversion
o*SBMLConverterRegister.h
o*SBMLConverterRegistry.cpp
o*SBMLConverterRegistry.hImplementation of SBMLConverterRegistry, a registry of available converters
o*SBMLDocument.cppImplementation of the top-level container for an SBML Model and associated data
o*SBMLDocument.hTop-level container for an SBML Model and associated data
o*SBMLDocumentPlugin.cppImplementation of SBMLDocumentPlugin, the derived class of SBasePlugin
o*SBMLDocumentPlugin.hDefinition of SBMLDocumentPlugin, the derived class of SBasePlugin
o*SBMLDocumentPluginNotRequired.cppImplementation of SBMLDocumentPluginNotRequired, the plugin class of layout package for the Model element
o*SBMLDocumentPluginNotRequired.hDefinition of SBMLDocumentPluginNotRequired, the plugin class of layout package for the SBMLDocument element, whose 'required' attribute must be 'false'
o*SBMLError.cppRepresents SBML errors and other diagnostics
o*SBMLError.hRepresents SBML errors and other diagnostics
o*SBMLErrorLog.cppStores errors (and messages) encountered while processing SBML
o*SBMLErrorLog.hStores errors (and messages) encountered while processing SBML
o*SBMLErrorTable.hRepresents SBML errors and other diagnostics
o*SBMLExtension.cppImplementation of SBMLExtension, the base class of package extensions
o*SBMLExtension.hDefinition of SBMLExtension, the core component of SBML package extension
o*SBMLExtensionException.cppSBMLExtensionException class, the exception class for package extension
o*SBMLExtensionException.hSBMLExtensionExceptions class, the exception class for package extension
o*SBMLExtensionNamespaces.cppImplementation of C-API for the SBMLExtensionNamespaces class
o*SBMLExtensionNamespaces.hSBMLExtensionNamespaces class to store level/version and namespace of SBML extension package
o*SBMLExtensionRegister.hDefinition of SBMLExtensionRegister, the template class for registering an extension package to SBMLExtensionRegistry class
o*SBMLExtensionRegistry.cppImplementation of SBMLExtensionRegistry, the registry class in which extension packages are registered
o*SBMLExtensionRegistry.hDefinition of SBMLExtensionRegistry, the registry class in which extension packages are registered
o*SBMLExternalValidator.cpp
o*SBMLExternalValidator.h
o*SBMLFileResolver.cppImplementation of SBMLFileResolver, the file system based resolver for SBML Documents
o*SBMLFileResolver.hDefinition of SBMLFileResolver, the file system based resolver for SBML Documents
o*SBMLFunctionDefinitionConverter.cpp
o*SBMLFunctionDefinitionConverter.hDefinition of SBMLFunctionDefinitionConverter, a converter replacing function definitions
o*sbmlfwd.hForward declarations for all opaque C types
o*SBMLInitialAssignmentConverter.cppImplementation of SBMLInitialAssignmentConverter, a converter inlining initial assignments
o*SBMLInitialAssignmentConverter.hDefinition of SBMLInitialAssignmentConverter, a converter inlining function definitions
o*SBMLInternalValidator.cppImplementation of SBMLInternalValidator, the validator for all internal validation performed by libSBML
o*SBMLInternalValidator.hDefinition of SBMLInternalValidator, the validator for all internal validation performed by libSBML
o*SBMLLevelVersionConverter.cppImplementation of SBMLFunctionDefinitionConverter, a converter replacing function definitions
o*SBMLLevelVersionConverter.hDefinition of SBMLLevelVersionConverter, the base class for SBML conversion
o*SBMLNamespaces.cppSBMLNamespaces class to store level/version and namespace
o*SBMLNamespaces.hSBMLNamespaces class to store level/version and namespace
o*SBMLReader.cppReads an SBML Document into memory
o*SBMLReader.hReads an SBML Document into memory
o*SBMLResolver.cppImplementation of SBMLResolver, the base class of package extensions
o*SBMLResolver.hDefinition of SBMLResolver, the base class for resolving SBML documents
o*SBMLResolverRegistry.cpp
o*SBMLResolverRegistry.hImplementation of SBMLResolverRegistry, a registry of available resolvers
o*SBMLRuleConverter.cpp
o*SBMLRuleConverter.hDefinition of SBMLRuleConverter, a converter sorting rules
o*SBMLStripPackageConverter.cppImplementation of SBMLStripPackageConverter, the base class of package extensions
o*SBMLStripPackageConverter.hDefinition of SBMLStripPackageConverter, the base class for SBML conversion
o*SBMLTransforms.cppTransform functions
o*SBMLTransforms.h
o*SBMLTypeCodes.cppEnumeration to identify SBML objects at runtime
o*SBMLTypeCodes.hEnumeration to identify SBML objects at runtime
o*SBMLTypes.hInclude all SBML types in a single header file
o*SBMLUnitsConverter.cppImplementation of SBMLUnitsConverter, for converting units to SI
o*SBMLUnitsConverter.hDefinition of SBMLUnitsConverter, for converting units to SI
o*SBMLUri.cppImplementation of SBMLUri, the utility class for handling uris
o*SBMLUri.hDefinition of SBMLUri, the utility class for handling uris
o*SBMLValidator.cppImplementation of SBMLValidator, the base class for user callable SBML validators
o*SBMLValidator.hDefinition of SBMLValidator, the base class for user callable SBML validators
o*SBMLVisitor.cppVisitor Design Pattern for the SBML object tree
o*SBMLVisitor.hVisitor Design Pattern for the SBML object tree
o*SBMLWriter.cppWrites an SBML Document to file or in-memory string
o*SBMLWriter.hWrites an SBML Document to file or in-memory string
o*SBO.cppSBO utility functions
o*SBO.hSBO utility Function
o*SBOConsistencyValidator.cpp
o*SBOConsistencyValidator.h
o*SimpleSpeciesReference.cppImplementation of SimpleSpeciesReference
o*SimpleSpeciesReference.hDefinitions of SimpleSpeciesReference
o*Species.cppImplementations of Species and ListOfSpecies
o*Species.hDefinitions of Species and ListOfSpecies
o*SpeciesReference.cppImplementation of SpeciesReference and ListOfSpeciesReferences
o*SpeciesReference.hDefinitions of SpeciesReference and ListOfSpeciesReferences
o*SpeciesType.cppImplementation of SpeciesType and ListOfSpeciesTypes
o*SpeciesType.hDefinitions of SpeciesType and ListOfSpeciesType
o*StoichiometryMath.cppImplementation of StoichiometryMath
o*StoichiometryMath.hDefinition of StoichiometryMath
o*Submodel.cppImplementation of Submodel, the SBase-derived class of the comp package
o*Submodel.hDefinition of Submodel, the SBase derived class of the comp package
o*SyntaxChecker.cppSyntax checking functions
o*SyntaxChecker.hSyntax checking functions
o*Trigger.cppImplementation of Trigger
o*Trigger.hDefinition of Trigger
o*Unit.cppImplementations of Unit and ListOfUnits
o*Unit.hDefinitions of Unit and ListOfUnits
o*UnitConsistencyValidator.cpp
o*UnitConsistencyValidator.h
o*UnitDefinition.cppImplementations of SBML's UnitDefinition and ListOfUnitDefinitions
o*UnitDefinition.hDefinitions of UnitDefinition and ListOfUnitDefinitions
o*UnitKind.cSBML UnitKind enumeration
o*UnitKind.hDefinition of SBML's UnitKind enumeration
o*util.cUtility functions
o*util.hUtility functions
o*Validator.cppBase class for SBML Validators
o*Validator.hBase class for SBML Validators
o*VConstraint.cppBase class for all SBML Validator Constraints
o*VConstraint.hBase class for all SBML Validator Constraints
o*XMLAttributes.cppXMLAttributes are a list of name/value pairs for XMLElements
o*XMLAttributes.hXMLAttributes are a list of name/value pairs for XML elements
o*XMLConstructorException.cppXMLConstructorException an exception thrown by XML classes
o*XMLConstructorException.hXMLConstructorException an exception thrown by XML classes
o*XMLError.cppRepresents errors (and messages) encountered during an XML parse
o*XMLError.hRepresents errors (and messages) encountered during an XML parse
o*XMLErrorLog.cppStores errors (and messages) encountered while processing XML
o*XMLErrorLog.hStores errors (and messages) encountered while processing XML
o*XMLExtern.hDefines LIBLAX_EXTERN
o*XMLNamespaces.cppA list of XMLNamespace declarations (URI/prefix pairs)
o*XMLNamespaces.hA list of XMLNamespace declarations (URI/prefix pairs)
o*XMLNode.cppA node in an XML document tree
o*XMLNode.hClass definition of XMLNode, a node in an XML document tree
o*XMLToken.cppA unit of XML syntax, either an XML element or text
o*XMLToken.hA unit of XML syntax, either an XML element or text
o*XMLTriple.cppStores an XML namespace triple
\*XMLTriple.hStores an XML namespace triple