 AlgebraicRule.cpp | Implementations of AlgebraicRule |
 AlgebraicRule.h | Definitions of AlgebraicRule |
 AssignmentRule.cpp | Implementations of AssignmentRule |
 AssignmentRule.h | Definitions of AssignmentRule |
 ASTNode.cpp | Abstract Syntax Tree (AST) for representing formula trees |
 ASTNode.h | Abstract Syntax Tree (AST) for representing formula trees |
 common.h | Common functions and macros for C and C++ |
 Compartment.cpp | Implementations of Compartment and ListOfCompartments |
 Compartment.h | Definitions of Compartment and ListOfCompartments |
 CompartmentType.cpp | Implementation of CompartmentType and ListOfCompartmentTypes |
 CompartmentType.h | Definitions of CompartmentType and ListOfCompartmentTypes |
 CompBase.cpp | Implementation of CompBase, the base class of extension entities plugged in SBase derived classes in the SBML Core package |
 CompBase.h | Definition of CompBase, the base class of extension entities plugged in SBase derived classes in the SBML Core package |
 CompConsistencyValidator.cpp | |
 CompConsistencyValidator.h | |
 CompExtension.cpp | Implementation of CompExtension, the core module of comp package |
 CompExtension.h | Definition of CompExtension, the core module of comp package |
 CompExtensionTypes.h | Include all SBML types of Comp extension in a single header file |
 CompFlatteningConverter.cpp | Implementation of a first flattening converter |
 CompFlatteningConverter.h | Definition of a first flattening converter |
 compfwd.h | SBML Comp C structure declarations |
 CompIdentifierConsistencyValidator.cpp | |
 CompIdentifierConsistencyValidator.h | |
 CompModelPlugin.cpp | Implementation of CompModelPlugin, the plugin class of comp package for the SBase element |
 CompModelPlugin.h | Definition of CompModelPlugin, the plugin class of comp package for the Model element |
 CompSBasePlugin.cpp | Implementation of CompSBasePlugin, the plugin class of comp package for the SBase element |
 CompSBasePlugin.h | Definition of CompSBasePlugin, the plugin class of comp package for the Model element |
 CompSBMLDocumentPlugin.cpp | Implementation of CompSBMLDocumentPlugin, the plugin class of comp package for the SBase element |
 CompSBMLDocumentPlugin.h | Definition of CompSBMLDocumentPlugin, the plugin class of comp package for the Model element |
 CompSBMLError.h | Represents SBML errors and other diagnostics |
 CompSBMLErrorTable.h | Represents SBML errors and other diagnostics |
 CompValidator.cpp | |
 CompValidator.h | Base class for SBML CompValidators |
 CompVisitor.cpp | Visitor Design Pattern for the SBML object tree |
 CompVisitor.h | Visitor Design Pattern for the SBML object tree |
 ConsistencyValidator.cpp | |
 ConsistencyValidator.h | |
 Constraint.cpp | Implementations of Constraint and ListOfConstraints |
 Constraint.h | Definitions of Constraint and ListOfConstraints |
 ConstraintMacros.h | Defines the validator constraint "language" |
 ConversionOption.cpp | Implementation of ConversionOption, the class encapsulating conversion options |
 ConversionOption.h | Definition of ConversionOption, the class encapsulating conversion options |
 ConversionProperties.cpp | Implemenentation of ConversionProperties, the class encapsulating conversion configuration |
 ConversionProperties.h | Definition of ConversionProperties, the class encapsulating conversion configuration |
 CVTerm.cpp | CVTerm I/O |
 CVTerm.h | Definition of a CVTerm class for adding annotations to a Model |
 Date.cpp | Date I/O |
 Date.h | Date I/O |
 Delay.cpp | Implementation of Delay |
 Delay.h | Definition of Delay |
 Deletion.cpp | Implementation of Deletion, the SBaseRef derived class of deletions package |
 Deletion.h | Definition of Deletion, the SBase derived class of deletions package |
 Event.cpp | Implementations of Event and ListOfEvents |
 Event.h | Definitions of Event and ListOfEvents |
 EventAssignment.cpp | Implementation of EventAssignment |
 EventAssignment.h | Definition of EventAssignment and ListOfEventAssignments |
 ExpectedAttributes.cpp | Implementation of ExpectedAttributes, the class allowing the specification of attributes to expect |
 ExpectedAttributes.h | Definition of ExpectedAttributes, the class allowing the specification of attributes to expect |
 extern.h | Definitions of LIBSBML_EXTERN and related things |
 ExternalModelDefinition.cpp | Implementation of ExternalModelDefinition, the SBase-derived class of the comp package |
 ExternalModelDefinition.h | Definition of ExternalModelDefinition, the SBase derived class of the comp package |
 FormulaFormatter.c | Formats an AST formula tree as an SBML formula string |
 FormulaFormatter.h | Formats an AST formula tree as an SBML formula string |
 FormulaParser.c | Parses an SBML formula string into an AST |
 FormulaParser.h | Parses an SBML formula string into an AST |
 FormulaTokenizer.c | Tokenizes an SBML formula string |
 FormulaTokenizer.h | Tokenizes an SBML formula string |
 FunctionDefinition.cpp | Implementation of FunctionDefinition and ListOfFunctionDefinitions |
 FunctionDefinition.h | Definitions of FunctionDefinition and ListOfFunctionDefinitions |
 IdentifierConsistencyValidator.cpp | |
 IdentifierConsistencyValidator.h | |
 InitialAssignment.cpp | Implementation of InitialAssignment and ListOfInitialAssignments |
 InitialAssignment.h | Definitions of InitialAssignment and ListOfInitialAssignments |
 InternalConsistencyValidator.cpp | |
 InternalConsistencyValidator.h | |
 KineticLaw.cpp | Implementation of KineticLaw |
 KineticLaw.h | Definition of KineticLaw |
 L1CompatibilityValidator.cpp | |
 L1CompatibilityValidator.h | |
 L2v1CompatibilityValidator.cpp | |
 L2v1CompatibilityValidator.h | |
 L2v2CompatibilityValidator.cpp | |
 L2v2CompatibilityValidator.h | |
 L2v3CompatibilityValidator.cpp | |
 L2v3CompatibilityValidator.h | |
 L2v4CompatibilityValidator.cpp | |
 L2v4CompatibilityValidator.h | |
 L3Parser.cpp | |
 L3Parser.h | Definition of the level 3 infix-to-mathml parser C functions |
 L3ParserSettings.cpp | Definition of the level 3 infix-to-mathml parser settings |
 L3ParserSettings.h | Definition of the level 3 infix-to-mathml parser settings |
 L3v1CompatibilityValidator.cpp | |
 L3v1CompatibilityValidator.h | |
 libsbml-config-common.h | |
 libsbml-config-packages.h | |
 libsbml-config.h | Decides whether to #include Unix or Windows configuration variables |
 libsbml-namespace.h | Defines C++ namespace of libSBML |
 libsbml-package.h | Definitions of the PACKAGE_ variables |
 libsbml-version.cpp | Define libSBML version numbers for access from client software |
 libsbml-version.h | Define libSBML version numbers for access from client software |
 List.cpp | Simple, generic list class |
 List.h | Simple, generic list utility class |
 ListOf.cpp | Wraps List and inherits from SBase |
 ListOf.h | |
 ListOfDeletions.cpp | Implementation of ListOfDeletions |
 ListOfDeletions.h | Definition of ListOfDeletions, the SBase derived class of deletions package |
 ListOfExternalModelDefinitions.cpp | Implementation of ListOfExternalModelDefinitions |
 ListOfExternalModelDefinitions.h | Definition of ListOfExternalModelDefinitions, the SBase derived class of externalModelDefinitions package |
 ListOfModelDefinitions.cpp | |
 ListOfModelDefinitions.h | Definition of ListOfModelDefinitions, the SBase derived class of modelDefinitions package |
 ListOfPorts.cpp | Implementation of ListOfPorts |
 ListOfPorts.h | Definition of ListOfPorts, the SBase derived class of ports package |
 ListOfReplacedElements.cpp | |
 ListOfReplacedElements.h | Definition of ListOfReplacedElements, the SBase derived class of replacedElements package |
 ListOfSubmodels.cpp | Implementation of ListOfSubmodels |
 ListOfSubmodels.h | Definition of ListOfSubmodels, the SBase derived class of submodels package |
 LocalParameter.cpp | Implementations of LocalLocalParameter and ListOfLocalLocalParameters |
 LocalParameter.h | Definitions of LocalParameter and ListOfLocalParameters |
 MathML.cpp | Utilities for reading and writing MathML to/from text strings |
 MathML.h | Utilities for reading and writing MathML to/from text strings |
 MathMLConsistencyValidator.cpp | |
 MathMLConsistencyValidator.h | |
 Model.cpp | Implementation of Model |
 Model.h | Definition of Model |
 ModelCreator.cpp | ModelCreator I/O |
 ModelCreator.h | ModelCreator I/O |
 ModelDefinition.cpp | Implementation of ModelDefinition, the Subelement derived class of modelDefinitions package |
 ModelDefinition.h | Definition of ModelDefinition, the SBase derived class of the comp package |
 ModelHistory.cpp | ModelHistory I/O |
 ModelHistory.h | ModelHistory I/O |
 ModelingPracticeValidator.cpp | |
 ModelingPracticeValidator.h | |
 ModifierSpeciesReference.cpp | Implementation of ModifierSpeciesReference |
 ModifierSpeciesReference.h | Definitions of ModifierSpeciesReference |
 operationReturnValues.h | Enumeration of values returned by operations within libSBML |
 OverdeterminedValidator.cpp | |
 OverdeterminedValidator.h | |
 Parameter.cpp | Implementations of Parameter and ListOfParameters |
 Parameter.h | Definitions of Parameter and ListOfParameters |
 Port.cpp | Implementation of Port, the SBase-derived class of the comp package |
 Port.h | Definition of Port, the SBase derived class of the comp package |
 Priority.cpp | Implementation of Priority |
 Priority.h | Definition of Priority |
 RateRule.cpp | Implementations of RateRule |
 RateRule.h | Definitions of RateRule |
 RDFAnnotation.h | RDFAnnotation I/O |
 RDFAnnotationParser.cpp | RDFAnnotation I/O |
 RDFAnnotationParser.h | |
 Reaction.cpp | Implementations of Reaction and ListOfReactions |
 Reaction.h | Definitions of Reaction and ListOfReactions |
 RegisterConverters.cpp | Registers all available converters |
 RegisterExtensions.h | |
 ReplacedBy.cpp | Implementation of ReplacedBy, the SBaseRef derived class of the comp package |
 ReplacedBy.h | Definition of ReplacedBy, the Replacing-derived class of the comp package |
 ReplacedElement.cpp | Implementation of ReplacedElement, the Subelement derived class of replacedElements package |
 ReplacedElement.h | Definition of ReplacedElement, the SBase derived class of replacedElements package |
 Replacing.cpp | Implementation of Replacing, the SBaseRef derived class of Replacings package |
 Replacing.h | Definition of Replacing, the SBaseRef-derived class of the comp package |
 Rule.cpp | Implementations of Rule and ListOfRules |
 Rule.h | Definitions of Rule and ListOfRules |
 SBase.cpp | Implementation of SBase, the base object of all SBML objects |
 SBase.h | Definition of SBase, the base object of all SBML objects |
 SBaseExtensionPoint.cpp | |
 SBaseExtensionPoint.h | Implementation of SBaseExtensionPoint |
 SBasePlugin.cpp | Implementation of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package |
 SBasePlugin.h | Definition of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package |
 SBasePluginCreator.h | Definition of SBasePluginCreator, the template class of SBasePlugin creator classes |
 SBasePluginCreatorBase.cpp | Implementation of SBasePluginCreatorBase, the base class of SBasePlugin creator classes |
 SBasePluginCreatorBase.h | Definition of SBasePluginCreatorBase, the base class of SBasePlugin creator classes |
 SBaseRef.cpp | Implementation of SBaseRef, the SBase-derived class of the comp package |
 SBaseRef.h | Definition of SBaseRef, the SBase derived class of the comp package |
 SBMLConstructorException.cpp | Implementation of SBMLConstructorException, the exception class for constructor exceptions |
 SBMLConstructorException.h | Definition of SBMLConstructorException, the exception class for constructor exceptions |
 SBMLConvert.cpp | Performs conversion between SBML levels |
 SBMLConverter.cpp | Implementation of SBMLConverter, the base class of package extensions |
 SBMLConverter.h | Definition of SBMLConverter, the base class for SBML conversion |
 SBMLConverterRegister.h | |
 SBMLConverterRegistry.cpp | |
 SBMLConverterRegistry.h | Implementation of SBMLConverterRegistry, a registry of available converters |
 SBMLDocument.cpp | Implementation of the top-level container for an SBML Model and associated data |
 SBMLDocument.h | Top-level container for an SBML Model and associated data |
 SBMLDocumentPlugin.cpp | Implementation of SBMLDocumentPlugin, the derived class of SBasePlugin |
 SBMLDocumentPlugin.h | Definition of SBMLDocumentPlugin, the derived class of SBasePlugin |
 SBMLDocumentPluginNotRequired.cpp | Implementation of SBMLDocumentPluginNotRequired, the plugin class of layout package for the Model element |
 SBMLDocumentPluginNotRequired.h | Definition of SBMLDocumentPluginNotRequired, the plugin class of layout package for the SBMLDocument element, whose 'required' attribute must be 'false' |
 SBMLError.cpp | Represents SBML errors and other diagnostics |
 SBMLError.h | Represents SBML errors and other diagnostics |
 SBMLErrorLog.cpp | Stores errors (and messages) encountered while processing SBML |
 SBMLErrorLog.h | Stores errors (and messages) encountered while processing SBML |
 SBMLErrorTable.h | Represents SBML errors and other diagnostics |
 SBMLExtension.cpp | Implementation of SBMLExtension, the base class of package extensions |
 SBMLExtension.h | Definition of SBMLExtension, the core component of SBML package extension |
 SBMLExtensionException.cpp | SBMLExtensionException class, the exception class for package extension |
 SBMLExtensionException.h | SBMLExtensionExceptions class, the exception class for package extension |
 SBMLExtensionNamespaces.cpp | Implementation of C-API for the SBMLExtensionNamespaces class |
 SBMLExtensionNamespaces.h | SBMLExtensionNamespaces class to store level/version and namespace of SBML extension package |
 SBMLExtensionRegister.h | Definition of SBMLExtensionRegister, the template class for registering an extension package to SBMLExtensionRegistry class |
 SBMLExtensionRegistry.cpp | Implementation of SBMLExtensionRegistry, the registry class in which extension packages are registered |
 SBMLExtensionRegistry.h | Definition of SBMLExtensionRegistry, the registry class in which extension packages are registered |
 SBMLExternalValidator.cpp | |
 SBMLExternalValidator.h | |
 SBMLFileResolver.cpp | Implementation of SBMLFileResolver, the file system based resolver for SBML Documents |
 SBMLFileResolver.h | Definition of SBMLFileResolver, the file system based resolver for SBML Documents |
 SBMLFunctionDefinitionConverter.cpp | |
 SBMLFunctionDefinitionConverter.h | Definition of SBMLFunctionDefinitionConverter, a converter replacing function definitions |
 sbmlfwd.h | Forward declarations for all opaque C types |
 SBMLInitialAssignmentConverter.cpp | Implementation of SBMLInitialAssignmentConverter, a converter inlining initial assignments |
 SBMLInitialAssignmentConverter.h | Definition of SBMLInitialAssignmentConverter, a converter inlining function definitions |
 SBMLInternalValidator.cpp | Implementation of SBMLInternalValidator, the validator for all internal validation performed by libSBML |
 SBMLInternalValidator.h | Definition of SBMLInternalValidator, the validator for all internal validation performed by libSBML |
 SBMLLevelVersionConverter.cpp | Implementation of SBMLFunctionDefinitionConverter, a converter replacing function definitions |
 SBMLLevelVersionConverter.h | Definition of SBMLLevelVersionConverter, the base class for SBML conversion |
 SBMLNamespaces.cpp | SBMLNamespaces class to store level/version and namespace |
 SBMLNamespaces.h | SBMLNamespaces class to store level/version and namespace |
 SBMLReader.cpp | Reads an SBML Document into memory |
 SBMLReader.h | Reads an SBML Document into memory |
 SBMLResolver.cpp | Implementation of SBMLResolver, the base class of package extensions |
 SBMLResolver.h | Definition of SBMLResolver, the base class for resolving SBML documents |
 SBMLResolverRegistry.cpp | |
 SBMLResolverRegistry.h | Implementation of SBMLResolverRegistry, a registry of available resolvers |
 SBMLRuleConverter.cpp | |
 SBMLRuleConverter.h | Definition of SBMLRuleConverter, a converter sorting rules |
 SBMLStripPackageConverter.cpp | Implementation of SBMLStripPackageConverter, the base class of package extensions |
 SBMLStripPackageConverter.h | Definition of SBMLStripPackageConverter, the base class for SBML conversion |
 SBMLTransforms.cpp | Transform functions |
 SBMLTransforms.h | |
 SBMLTypeCodes.cpp | Enumeration to identify SBML objects at runtime |
 SBMLTypeCodes.h | Enumeration to identify SBML objects at runtime |
 SBMLTypes.h | Include all SBML types in a single header file |
 SBMLUnitsConverter.cpp | Implementation of SBMLUnitsConverter, for converting units to SI |
 SBMLUnitsConverter.h | Definition of SBMLUnitsConverter, for converting units to SI |
 SBMLUri.cpp | Implementation of SBMLUri, the utility class for handling uris |
 SBMLUri.h | Definition of SBMLUri, the utility class for handling uris |
 SBMLValidator.cpp | Implementation of SBMLValidator, the base class for user callable SBML validators |
 SBMLValidator.h | Definition of SBMLValidator, the base class for user callable SBML validators |
 SBMLVisitor.cpp | Visitor Design Pattern for the SBML object tree |
 SBMLVisitor.h | Visitor Design Pattern for the SBML object tree |
 SBMLWriter.cpp | Writes an SBML Document to file or in-memory string |
 SBMLWriter.h | Writes an SBML Document to file or in-memory string |
 SBO.cpp | SBO utility functions |
 SBO.h | SBO utility Function |
 SBOConsistencyValidator.cpp | |
 SBOConsistencyValidator.h | |
 SimpleSpeciesReference.cpp | Implementation of SimpleSpeciesReference |
 SimpleSpeciesReference.h | Definitions of SimpleSpeciesReference |
 Species.cpp | Implementations of Species and ListOfSpecies |
 Species.h | Definitions of Species and ListOfSpecies |
 SpeciesReference.cpp | Implementation of SpeciesReference and ListOfSpeciesReferences |
 SpeciesReference.h | Definitions of SpeciesReference and ListOfSpeciesReferences |
 SpeciesType.cpp | Implementation of SpeciesType and ListOfSpeciesTypes |
 SpeciesType.h | Definitions of SpeciesType and ListOfSpeciesType |
 StoichiometryMath.cpp | Implementation of StoichiometryMath |
 StoichiometryMath.h | Definition of StoichiometryMath |
 Submodel.cpp | Implementation of Submodel, the SBase-derived class of the comp package |
 Submodel.h | Definition of Submodel, the SBase derived class of the comp package |
 SyntaxChecker.cpp | Syntax checking functions |
 SyntaxChecker.h | Syntax checking functions |
 Trigger.cpp | Implementation of Trigger |
 Trigger.h | Definition of Trigger |
 Unit.cpp | Implementations of Unit and ListOfUnits |
 Unit.h | Definitions of Unit and ListOfUnits |
 UnitConsistencyValidator.cpp | |
 UnitConsistencyValidator.h | |
 UnitDefinition.cpp | Implementations of SBML's UnitDefinition and ListOfUnitDefinitions |
 UnitDefinition.h | Definitions of UnitDefinition and ListOfUnitDefinitions |
 UnitKind.c | SBML UnitKind enumeration |
 UnitKind.h | Definition of SBML's UnitKind enumeration |
 util.c | Utility functions |
 util.h | Utility functions |
 Validator.cpp | Base class for SBML Validators |
 Validator.h | Base class for SBML Validators |
 VConstraint.cpp | Base class for all SBML Validator Constraints |
 VConstraint.h | Base class for all SBML Validator Constraints |
 XMLAttributes.cpp | XMLAttributes are a list of name/value pairs for XMLElements |
 XMLAttributes.h | XMLAttributes are a list of name/value pairs for XML elements |
 XMLConstructorException.cpp | XMLConstructorException an exception thrown by XML classes |
 XMLConstructorException.h | XMLConstructorException an exception thrown by XML classes |
 XMLError.cpp | Represents errors (and messages) encountered during an XML parse |
 XMLError.h | Represents errors (and messages) encountered during an XML parse |
 XMLErrorLog.cpp | Stores errors (and messages) encountered while processing XML |
 XMLErrorLog.h | Stores errors (and messages) encountered while processing XML |
 XMLExtern.h | Defines LIBLAX_EXTERN |
 XMLNamespaces.cpp | A list of XMLNamespace declarations (URI/prefix pairs) |
 XMLNamespaces.h | A list of XMLNamespace declarations (URI/prefix pairs) |
 XMLNode.cpp | A node in an XML document tree |
 XMLNode.h | Class definition of XMLNode, a node in an XML document tree |
 XMLToken.cpp | A unit of XML syntax, either an XML element or text |
 XMLToken.h | A unit of XML syntax, either an XML element or text |
 XMLTriple.cpp | Stores an XML namespace triple |
 XMLTriple.h | Stores an XML namespace triple |